Gene Information

Gene_ID: "lnckb.10000"
Location: chr11:112961247-113280283
Strand: +
   CHESS : CHS.10000
   LNCipedia : lnc-TTC12-2
   NONCODE : NONHSAG009638.2
   GENE_TYPE: protein_coding
   gene_name: NCAM1
Positional Classification: genic
External Information
   Ensembl region in detail ↗    NCBI Gene ↗    OMIM ↗    ClinVar ↗

Tissue Expression plot for lnckb.10000

Gene expression box plot distribution of the gene lnckb.10000. The x-axis represents the 31 solid organ human normal tissues from GTEx and y-axis is the TPM expression for the gene lnckb.10000 in the indicated tissue.



Tissue Specificity score for lnckb.10000

The tissue specificity of genes encoding lncRNA is calculated as the Tau and PEM score. Tau summarizes in a single number whether a gene is tissue-specific or ubiquitously expressed and PEM shows for each tissue separately how specific the gene is to that tissue. The PEM scores is the expression of the lnckb.10000 in a given tissue in relation to its average expression across all other genes and other tissues.

Tau score for lnckb.10000 is 0.8085




Tissue Expression Network/Module and Pathway information

Co-expression network analysis of gene expression data for 30 tissues assigned lnckb.10000 to a module/cluster of genes in each dataset. Shown below is a table of top 3 pathways for which all of the co-expression module containing lnckb.10000 as one of the genes enriched in. Click on tissue name to browse the tissue page to visit the lncBodyMap page of that particular tissue. Or icon to download the full pathway enrichment results for that tissue. Or click on Module to download the adjacency matrix.



Number of SNPs that alter the expression of lnckb.10000 at p < 0.05 for the indicated tissues are summarized in the barplot, with the number of SNPs altering the expression printed on the respective bars on the barplot. List of SNPs that alter the expression of lnckb.10000 at p < 0.05 for the indicated tissues are shown in a table.