Metamoodics Gene Information

 

  Chromosome: chr12    Cytoband: p13.33    Gene: CACNA1C

 

MD - Genomewide Association Studies for CACNA1C


 

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Description

 
Shown here are the results for gene CACNA1C from a mega-analysis of major depression carried out by the Psychiatric GWAS Consortium (PGC) of 9 GWAS studies. The total sample included 9,240 MDD cases and 9,519 controls all of European ancestry with data on ~1.2M genotyped and/or imputed SNPs.

 

Details of the methods for the mega-analysis are provided here.

 

 

Results Figure

 
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Figure Legend: A regional plot of association findings around the selected gene (+/-10Kb upstream and downstream of the union of the selected gene’s Refseq transcripts). The X-axis shows the position along the gene, the left Y-axis shows the -log10(p-value) and the right Y-axis shows the recombination rate estimated from HapMap data. Each point represents a SNP. The index SNP with the best p-value is depicted by a diamond, and the linkage disequilibrium of neighboring SNPs with the index SNP is color coded.

 

 

Results Table

 
CHR Marker pos_bp (hg18) A1 A2 INFO OR SE -LOG(10)P RSQUARE
12rs18600942457579TC0.9340.02190.9732.74304184743907(Index SNP)
12rs22390732408761TC0.9890.9360.0020712.683819901106550.00076
12rs18600952461290TC0.9531.070.0021062.676541633150530.89373
12rs107740372290787AG0.9510.92150.0021612.665345233116766e-05
12rs108486642461030AC0.9591.0680.0024552.609948503541010.90392
12rs47659142290638TC0.9671.0790.0039182.406935568341280.00047
12rs22380822356972AG0.6741.460.01171.931814138253840.00029
12rs22390872456906TC0.9610.94670.01341.872895201635190.68002
12rs47656782406556TC0.9880.93750.014611.83534978406570.00024
12rs107350082408348AT0.9931.0660.014751.831207979685828e-05
12rs22390752409202AG10.94040.018921.723078867934230.00019
12rs22833082409568TG0.9591.0630.021141.674895017028595e-04
12rs79602972416780TC0.6780.90280.02351.628932137728260.05422
12rs8870012465272AC0.9730.95230.023581.627456199240930.63511
12rs22390892460249AG0.9811.0490.025931.586197483230650.62738
12rs110622252406250TC0.9620.94820.027061.56767220773840.00273
12rs110622882612055TC0.9171.0530.049561.304868702295970.01974
12rs22832932290868AG0.7221.1640.057631.239351380418640.00016
12rs22390832443304AG0.9491.0460.057671.23905004858910.20717
12rs10067372215556AG11.0430.062251.205860644232231e-05
12rs72975822226067TC0.9931.0410.06231.205511953340830.00201
12rs8868982352197TC0.8671.0630.06331.198596289982650.00933
12rs22380562198205TC0.9970.96160.064171.192667960708810.00273
12rs110622862605476AG0.8540.91980.06451.190440285364730.01665
12rs42989672278455AG0.9811.0420.064961.187353983766881e-05
12rs8821932220881AG0.9430.95950.06631.178486471595230.00034
12rs47659052219845CG0.9931.0420.066791.175288556535277e-05
12rs79652962442797TC0.9360.95770.068031.167299529039430.2044
12rs22833122454752AC0.9291.0410.070231.153477331583710.32214
12rs22380922593527AG0.9621.0480.07031.153044674980180.00838
12rs10245822272507AG0.981.0410.071021.14861933203441e-05
12rs72972522095330TC0.8871.0610.071281.147032308971180.00058
12rs8765032667440TC0.991.0570.071971.142848497312510.00181
12rs9949012403439AG0.9430.96160.07261.139063379299910.00417
12rs107740482432802TC0.7660.9490.072651.138764381365960.1026
12rs47659582534370TC0.8761.090.075231.123608938180810.01326
12rs108486452290505AG0.8740.96080.079351.100453068909130.00019
12rs2160152600759TG0.8540.95180.079471.099796786983110.01017
12rs64893672345937CG0.8480.94830.080291.095338542084480.01565
12rs79713792449181TC0.9450.95970.081991.086239113587680.20194
12rs107740352238935TC0.9931.040.082361.084283662054010.00035
12rs107445602257360TC0.9861.040.082461.083756669534660.00016
12rs21591002216654TC11.0390.083651.077534054701590
12rs124232772184580AC0.9560.96380.087391.058538260652670.00298
12rs22833142455833AG0.9471.040.092581.033482823553210.20717
12rs22391182531014TC0.9861.0430.094061.026595025589940.00834
12rs73121052393616AG0.8661.040.098941.004628093971840.00543
12rs73121072393631AG0.8651.040.10130.994390554639720.00601
12rs107740422389390TC0.8941.0390.10250.9892761346082270.00399
12rs47659292388613TC0.8971.0380.10740.9689957186364630.00536
12rs72950892310725TC0.980.95510.10860.9641701747471720.00641
12rs22380552194668AG0.9081.1130.1090.9625735020593760.01207
12rs47659372440796TC0.9190.96480.11010.9582126810282480.30774
12rs116132102621573AC0.921.0480.11330.9457700901366030.00094
12rs118306912321739AG0.5871.2470.11660.9333014495770050.00445
12rs23704132225131TC0.9960.96760.12050.9190129530891130.00409
12rs18600972411269TC0.8720.95810.12070.9182927299026510.00254
12rs22391242621154TC0.9221.0470.12340.9086848403027770.00094
12rs108486422201833AG0.9920.96660.12530.902048929005850.00012
12rs104919642370692AG0.9840.96430.12610.8992849134269180.01412
12rs47659662615463AG0.880.92760.12820.8921119748172010.00715
12rs11080732203899TC0.9960.96780.12970.887060023915920.00121
12rs22380692326323TC0.9950.96820.13080.8833922560117520.00161
12rs47659302414506TG0.7321.0430.1350.8696662315049941e-05
12rs128138472606812AG0.9220.94540.14070.8517059025652540.01909
12rs22380152045674TC0.6550.88880.14140.8495505905391190.02505
12rs73041372328161AG0.1920.04570.14190.8480176045425260.00443
12rs22380992624388TC0.9460.93180.1440.841637507904750.00702
12rs22380702326376TG0.9750.96920.14530.8377343857019780.00012
12rs20519912312226AC0.9221.2260.14590.8359447081065480.00445
12rs73039772212509AG0.910.92060.14720.832092189998520.00142
12rs79770392485395AG0.9451.0540.14760.8309136425129770.06741
12rs20070442215221AG10.96920.14810.8294449414787920.00044
12rs110621612200231TC0.9980.96980.15440.8113527040002830.00142
12rs2160132599893AG0.9171.0460.15880.7991495019089230.00042
12rs128138882606879AC0.8941.0450.16920.7715996412969958e-05
12rs47659382444874AG0.9221.0310.17280.7624562618571260.08287
12rs10763902602980AC0.8810.95760.17430.7587026128900070.00196
12rs122305352117693AG0.6831.4610.18550.7316560860489350.00443
12rs169279472417027AC0.7641.0470.1910.7189666327522720.0213
12rs110622602517044AG0.9620.92460.19330.7137681459714470.005
12rs2160462634262AG0.4980.74440.19370.7128703792808890.00891
12rs47659362433737AG0.8930.96940.19560.7086311495484170.17698
12rs105057242652331TC10.96130.20240.6937894918322380.00625
12rs22380962620174AC0.8981.0620.20530.6876110506294082e-05
12rs22390342217955TG0.9471.090.20660.6848696828163980.00029
12rs110622222395734AG0.6060.94130.20660.6848696828163980.03266
12rs108486752530109TC0.9360.92820.20950.6788159726976860.0036
12rs116086412553911AG0.640.94360.210.6777807052660810.01966
12rs43948872520241AG0.9731.0390.21110.6755117666923440.00152
12rs110622282414985AG0.5381.0370.21120.6753060861382250.0048
12rs22832872168985TC0.9810.97330.21590.6657473576657690
12rs107740302162951AG0.9191.0280.21860.6603498423863160.00099
12rs22832902193882AG0.8510.96720.21970.658169943079490.00877
12rs79754672220524AG0.9491.0870.21980.6579723119125280.00029
12rs79686802370464TC0.9730.96640.22210.6534514414515260.01609
12rs22832882169309TC0.9941.0270.22220.6532559453951511e-05
12rs20519922311587AG0.9870.9590.22320.6513058097344590.00249
12rs985452607556TC0.8930.9630.23140.6356366453842690.00371
12rs23027292654233TC0.9681.0350.23140.6356366453842690.00052
12rs28877492304806AG0.9071.1850.23230.6339507901997650.00445
12rs110621382151203AG0.9910.96760.23430.6302277114030370
12rs108486652479345TC0.6921.0370.23520.6285626825958990.00203
12rs22390502317675CG0.981.0420.23680.6256183019491180.00249
12rs22832942293881TC0.980.97470.23690.6254349392772350.00126
12rs23027272644862AC0.9450.94770.23730.6247022617826610.00155
12rs22390312206430TG0.9620.93140.24070.618523909724970.0015
12rs20519902312288AG0.9390.90750.24080.6183435174142130.01352
12rs110621652204109TC0.9291.0690.24180.6165437034752470.00151
12rs108486352186456AT0.991.0260.2420.6161846340195690.00011
12rs47659612538733TC0.9750.96710.24380.6129662987176370.00834
12rs23705962536609AG0.9781.0290.24520.6104795341536230.02341
12rs22390742408810TC0.990.97480.24890.6039751033914072e-05
12rs123123222642067AG0.9521.0310.25130.5998075114074240.0233
12rs79599382320726AC0.9811.040.25430.5946536398242910.00558
12rs64893632320099AC0.981.040.25960.5856953118716680.00564
12rs22390332208007AC0.9751.0240.26240.5810361692963773e-05
12rs110621922310961AG0.9891.0390.26270.580539927213930.00249
12rs10349362531421TC0.9740.97340.26430.577902836868290.01196
12rs125795292115897AG0.9963.1950.2660.5751183633689330.00443
12rs110621342138404AG0.9990.3130.26610.5749551254486110.00443
12rs22390302206202AG0.9821.0240.26640.5744657795017362e-05
12rs79793892311723AG0.9881.0240.27190.56559079241257e-05
12rs110621562187784AG0.9911.0240.27250.5646334933873398e-05
12rs7207212538005AG0.9831.0270.27560.5597207867644120.02341
12rs110621642203913AC0.9730.93660.27570.5595632338942260.00151
12rs38195262306783TC0.9940.97680.27860.5550188879120550.00907
12rs15445022309071AG0.9930.97670.28140.5506759069012730
12rs22833012317067AG0.9671.0240.28160.5503673495299250.00036
12rs7404172370110AC0.9921.0240.28280.5485205948751380
12rs110622232397028AG0.4380.85910.28380.5469876088785450.00422
12rs73049862308366TC0.9680.91550.28390.5468346074741430.01345
12rs108486322186254TC0.9861.0240.28420.5463759264085490.00042
12rs22390682404727TC0.9641.0270.28510.545002782690540.01151
12rs9294922540841TC0.9621.0310.2860.5436339668709570.00834
12rs47659602538191AG0.9820.97450.28690.5422694517540020.02341
12rs123134422426558TC0.9951.0260.2880.5406075122407690.00148
12rs8821942220713AG1.010.97780.28810.5404567417195870.00689
12rs47658822045912TC0.7751.0260.29270.5335772775662080.00023
12rs47656812427457TC0.940.97710.29340.5325398904927360.10459
12rs22390622372833TG0.981.0230.29510.5300307905000410.00293
12rs123056782633800AG0.8031.0460.29550.5294425147827260.00135
12rs28877802369887TC0.9860.97530.29560.5292955702772120.05309
12rs22380542187905TC0.990.97750.2960.5287082889410610.00011
12rs108486362186754TG0.991.0230.29610.5285615926107010.00011
12rs108486732522541TC0.9910.97520.29720.5269511949114620.0099
12rs108486832661391TC0.9870.97160.29740.5266590358140650.00092
12rs23705152381423AG0.9971.0310.29790.5259294967849560.07146
12rs2159822576308TC0.7051.080.29810.5256380239673690.00603
12rs23704142238657AG0.9850.9780.30330.5181275896893360
12rs1046292625616AG0.9210.95230.30350.5178413045887240.0013
12rs108486332186280AG0.9890.97780.3060.514278573518420.00011
12rs22391172521669AG0.9930.97560.30610.5141366704026650.00996
12rs11227842375297AT0.950.96970.30660.5134278494816440.08222
12rs79639552515228AG0.9820.97560.30730.5124374397436220.0138
12rs22390972489738TC0.9720.97720.30930.5096200799968210.09624
12rs47659022183226AG0.9821.0220.30950.5093393466438630.00011
12rs178012652468876AG0.7751.0350.31090.5073792779568080.02598
12rs19902402509517AG0.9811.0250.31310.5043169323830850.0138
12rs47656792419279CG0.971.0250.31690.49907776080970.00152
12rs110622042345664TC0.9021.0230.3180.4975728800155670.00425
12rs47659522517732TC0.9851.0240.32410.489320968967790.01724
12rs110622582516979AG0.9191.060.3260.4867823999320610.00156
12rs108486282182750TC0.9760.97880.32910.4826721177056260.00042
12rs2160092592794TC0.6931.0420.32950.4821445810699710.0011
12rs72979922041910AG0.5611.0460.330.4814860601221130.00665
12rs22380342105889TC0.9850.97610.33010.4813544756696887e-04
12rs18600912423159TG0.9841.0240.33260.47807775511650.00143
12rs7339932535198AG0.9660.94360.33480.4752145506787780.00177
12rs10092812399245AG0.8591.0220.33520.4746959900417610.0078
12rs7581162393517AG0.7960.96950.33530.474566446571180.00089
12rs123693342649216AC0.4730.94980.33660.4728858883601950.01368
12rs104591252180125TC0.9871.0210.33780.471340354765018e-05
12rs64893752648029AG0.9511.0280.3390.4698003017969180
12rs47659332428736AG1.011.0230.34130.4668637117213610.00111
12rs22390372233977AG0.9450.97920.34290.4648325148850560.00552
12rs110621582196239TC0.9791.060.34390.4635678241779870.0015
12rs22390382244391AG0.991.0210.34410.463315327379070.00011
12rs47659512501832TC0.5920.96290.34480.4624327428473250.09182
12rs118310852385119AG0.9940.97260.34880.457423523739470.07863
12rs79571632675893AC0.9160.95220.35450.4503837604809150.00916
12rs22390472305967TG0.9970.97910.35780.4463596637686460.00389
12rs8821952220662CG0.9481.020.35910.4447845948739270.00485
12rs7404162370153AG0.9690.98010.36230.4409316659654630
12rs15445142428447AG0.9921.0240.36370.4392566989452880.00041
12rs22832982305039TC0.9811.0330.36570.4368750396619560.00022
12rs22390522323349AG0.9770.96870.3680.4341521813264820.00035
12rs826072607523TC0.5180.8280.37790.4226231080829850.00896
12rs72988452154594AG0.360.860.37980.4204450395990010.00037
12rs22380742327098TC0.9440.96980.38950.4094925379914170.00038
12rs22380832357262TC0.9711.0190.39080.4080454449532650.01751
12rs24703922025691TC0.9721.020.39390.4046140191908580.00702
12rs7582312436562TG0.811.0330.39580.4025242101296230.05912
12rs47656822428828TC0.9820.98180.40730.3900855899140020.00087
12rs22832952294172AG0.9871.0290.41290.3841551171252980.00024
12rs20240772320856AG0.9450.98130.4140.3829996588791010.00845
12rs22390912471940TC0.9611.0210.41520.3817426551595990.13253
12rs71383722027165TC0.9711.0190.4220.3746875490383260.00631
12rs118327382560963AG0.9081.020.4240.3726341434072670.0322
12rs10763442424249AG0.9640.97970.4280.3685562309868280.00034
12rs22390482307978AG0.990.9710.42860.367947833294190.00088
12rs22380642312442AC0.9910.9710.4290.3675427078152760.00088
12rs22390442300439TC0.9870.97120.43150.3650191999487720.00093
12rs44410762372319TC0.9740.98320.43550.3610118406563180.00844
12rs10152872475647AG0.9721.020.4380.35852588949590.13253
12rs22390612372773TC0.9781.0220.43850.3580304022979410.01882
12rs22391062497139AT0.9571.0270.44370.3529105712834450.01538
12rs108486482316777AG0.9930.9720.44380.3528127021040110.00088
12rs79679592370575AG0.9941.0370.44430.3523236867591290.03765
12rs39223152160160CG0.3181.1510.44570.3509573659138240.00038
12rs22380612296049AG0.9920.97370.44920.347560252410580.00038
12rs73057652057925CG0.8380.98250.45650.3405592181296820.00749
12rs110622412456847TC0.5851.0640.45910.3380927072339790.0127
12rs47656802427360AG0.9661.020.45940.3378090091409930.00053
12rs71332592331668TC0.7621.0210.46110.3362048777805924e-05
12rs104669072675237TG0.9061.040.46170.3356401254488590.01032
12rs72996582560524TC0.9170.97760.46190.3354520377534530.00471
12rs22833182480902AG0.8921.0170.4710.3269790928711040.00777
12rs37942842667332TC0.940.96220.47120.3267947182209550.00992
12rs122313502505451AG0.9491.0250.47390.3243132913005990.01541
12rs38195292306920AT0.9831.0270.47480.3234892897174460.00093
12rs108486082049190TC0.9870.9810.47750.3210266240802350.00049
12rs22380182048922TC0.990.98140.48810.3114911923434790.00026
12rs123026462199181TC0.2023.8610.48810.3114911923434790.00443
12rs169294862476544AG0.7281.0680.48980.3099812192113050.0089
12rs22996592094001TC0.1992.1910.490.3098039199714860.00443
12rs22996562035408AG0.9171.0390.49130.3086532358651780.01603
12rs22380272087219TG0.9831.0170.49210.3079466349659190.00261
12rs2160392628980TC0.9410.98190.49240.3076819557407210.0231
12rs107740222065375TC0.7540.97180.49580.3046934775681970.00836
12rs9564512554963TC0.9360.97670.50490.2967946293045140.03974
12rs7337822381572AT0.981.0240.50560.2961929347256710.02956
12rs22390162153653AG0.9460.98480.51080.2917491114086220.00872
12rs118376222326187AC0.3412.2490.51220.2905604258675890.00445
12rs22380792343619TC0.961.0140.52110.2830789268332390.01131
12rs47658982103284AG0.990.98560.52240.2819968317329830.00821
12rs22391092499072TG0.9631.0220.53070.2751509123706140.01541
12rs22996642096306AG0.9970.98520.53120.2747419336400390.00034
12rs22391042493804TG0.9591.0220.53120.2747419336400390.01541
12rs116149662216515AG0.9240.96990.53190.274170009679420.00285
12rs107740442420751AG0.9461.0330.53240.2737619531973620.00093
12rs22390652402428AG0.9190.98640.53680.2701874928390640.00523
12rs22380292089157TG0.9951.0150.53730.2697831594313060.00152
12rs22478332102418TC0.9861.0140.5380.2692177243336110.00634
12rs15583222100316AG0.9911.0150.53830.2689756201843120.00144
12rs22391312099320AG0.9910.98550.53950.2680085509810710.00188
12rs2159922586219TC0.9261.0240.54160.2663213443229120.00622
12rs18601022418751AG0.9421.0330.54220.2658404867555330.00091
12rs21085702291849AG0.9771.0160.54380.2645607967485190.00337
12rs108486562423250AG0.9491.0320.54950.2600323032404910.00093
12rs2160312627004TC0.9340.98420.55420.2563334785537870.0231
12rs43709872365187AG0.9561.0130.55840.2530545903848950.00536
12rs22380902553593AG10.9870.56360.2490290155626810.051
12rs72952502647204TC0.8840.98560.56650.2468000858005840.01692
12rs15583212100581TC0.9891.0140.57120.2432118012318820.00152
12rs23704192294118AG0.91.0240.57210.2425280522343320.00903
12rs2159962589558CG0.9560.98450.57220.2424521465307560.01195
12rs22832802078651AC0.8240.97910.57280.2419969907002010.01004
12rs23704112152186AC0.9760.98620.57370.2413151501175590.00408
12rs7585632607320CG0.6881.0440.57670.2390500485891030.01127
12rs2159862580141TC1.010.98510.57860.2376215706880360.0079
12rs11083852352591AC0.9820.9880.58050.2361977759254070.01555
12rs22390152153456TC0.9331.0130.58540.2325472819022270.00628
12rs108486682491453TC0.9320.98620.58540.2325472819022270.08482
12rs22390452304160TC0.9871.0120.58950.2295161905688920.00522
12rs79660422284614TC0.9241.0270.5930.2269453066357370.00285
12rs79729472040694AC0.8630.98530.59420.2260673525323550.00483
12rs2160082591398TC0.9650.98540.59650.2243895519936390.0079
12rs23706002536797AG0.9741.0260.60560.2178141335079840.00471
12rs22832722052747TC0.8551.0140.6080.2160964207272650.0047
12rs23705992536770AG0.9651.0260.60860.2156680519778520.00471
12rs116159982230427CG0.961.0250.61540.210842508088560.00292
12rs178012112417003AG0.8640.98820.62260.2057908836535040.07532
12rs2160292625043TC0.9380.98710.62850.2016947179780230.0231
12rs47657002555393AC0.9191.0130.63750.1955198108940070.09861
12rs2160142600712TG0.3011.1150.64090.1932097284159330.00445
12rs101609932369826CG0.9930.99010.64220.1923296987695160.00941
12rs22832752054821TC0.8741.0130.64290.1918565742385090.00361
12rs37943002117440AC0.4671.5130.64360.1913839645730080.00443
12rs73027432139849TC0.9990.9880.64450.1907770783105780.00665
12rs118315572385250TG0.9490.98340.64460.1907096988236840.03082
12rs64893482078476AC0.9451.0110.64840.1881569938235230.00041
12rs22390282202471TC0.9750.98250.65040.1868194674139880
12rs8803422351868TC0.9770.99010.65130.1862189218259180.01887
12rs2159902585561AG0.980.98780.65530.1835598320438610.00797
12rs116104482266414AG0.961.0220.65610.18302996224270.00285
12rs72957752647666TC0.8491.0260.65790.1818401136028150.02282
12rs110620932036740AG0.9051.0110.66380.1779627519274150.00203
12rs22833062359651TC0.9760.99050.66440.1775703762206430.0158
12rs10066902245897TC0.9650.97910.66490.1772436670486090.00292
12rs2159892584127AG0.9850.98840.66750.1755487299633870.01201
12rs22380222056739TG0.8491.0120.66980.1740548567961520.00365
12rs71317052056841AG0.8490.98840.67110.1732127611837080.00354
12rs101611812640991AC0.9541.010.6750.1706962271689750.01579
12rs116147962249361AG0.9561.0210.6760.1700533040583640.0023
12rs22391052493926CG0.8941.0130.67660.1696680065480380.04508
12rs10349372558025AG0.9810.98630.67680.1695396499690330.04939
12rs107740432413361AG0.4521.0140.67790.1688343660905580.04207
12rs74853592246054AG0.9721.020.6840.1649438982798840.00285
12rs22703712656118AG0.8230.97390.68570.1638658505346250.01803
12rs22832832081406TC0.9550.99080.6880.1624115617644890.00037
12rs22380192054107AG0.8521.0110.68820.1622853317150890.00416
12rs2159762564899TC0.7970.98290.68980.1612768099686280.00628
12rs22832762055108TC0.851.0110.69110.1604591070310310.0028
12rs73031402164267TC0.3581.0680.69130.1603334431175670.00038
12rs110623012647214AG0.8990.98590.69330.1590787998012280.00016
12rs116111542232267AC0.9671.0190.6970.1567672219019910.00285
12rs23027312657319TC0.830.97520.70010.1548399223480540.01803
12rs22380172048806AG0.821.0090.70510.1517492853229580.01986
12rs7236722031822TC0.9480.99190.71280.1470323089711820.01148
12rs22996572036217TG0.9581.0090.71330.1467277759793170.00142
12rs2159812575617AG11.010.71340.1466668949976650.01201
12rs79721032258981TC0.9520.98270.71980.1427881576831080.00285
12rs79715052323449TC0.91.0380.72010.1426071890790990.00896
12rs22390822431670AG0.9410.99250.73040.1364392354737570.1095
12rs22380772336345AG0.8581.0110.73050.1363797797296840.00264
12rs73072712537545TC0.910.96670.73150.135785669538670
12rs23702512042552TC0.771.0090.73270.1350738084609944e-05
12rs45035982539814CG0.8791.0340.73570.1332992439575010
12rs22390942480799AG0.8691.0080.74080.1302990263261221e-04
12rs110621602197359TC0.2040.70360.7430.1290111862394250.00445
12rs22380122044066AG0.8630.99260.74580.1273776209747120.00074
12rs169294712472004AG0.8971.010.75890.1198154471735670.06053
12rs23027282644929AC0.9710.99280.76630.1156011744433140.01806
12rs47659672653298TC0.9371.0160.77730.1094113322945130.02996
12rs7404562038931AG0.9451.0090.77910.1084067956510350.00026
12rs169294472444306TC0.9590.99330.78430.1055177849899090.01911
12rs7404192335625AG0.8950.99370.78580.1046879755242130.00187
12rs22380432145924AG1.010.99430.78960.102592860338420.00379
12rs22833242516746TC0.781.0260.79060.1020431899930482e-04
12rs64893582293385TC0.1220.79530.79350.1004530689091330.00445
12rs22390802424950AG0.991.0060.79540.09941441335003850.09553
12rs110620982045165TC0.5920.98860.79930.09729018703012290.00199
12rs108486582431514TC0.9510.99450.79980.09701860020249720.11285
12rs37942882659482AG0.961.0130.79990.09696430321150270.01725
12rs23706022546944TC0.921.0070.80460.09441997176475750.07998
12rs98883682023877AG0.9720.99270.80510.09415017335768120.0033
12rs22380912592525AG0.6041.0120.81560.08852278289389760.0396
12rs22390792421079AG0.9841.0050.81580.08841629901892420.09489
12rs47659342430089AG0.9251.0050.82410.08402008585977560.11842
12rs47656862430344AG0.9961.0050.82430.08391470015629730.09852
12rs7651252026468TC0.9861.0050.83240.07966792846041070.00676
12rs47656872430377AG0.9970.99560.83540.07810552907089770.09772
12rs108486222144312AG0.9790.99580.84480.0732460948102630.00115
12rs22380872483977TC0.9380.99290.85950.06575411897692880.02327
12rs110620952039528TC0.7521.0110.86470.06313454102437740
12rs73111472578082AG0.7910.99580.86520.06288348923294610.14268
12rs110623032649232AG0.9221.010.86560.06268275223750580.02996
12rs71393292328702AT0.6881.0080.86620.06238182060617650.00117
12rs107740292151068AG0.9651.0040.86710.06193081377661430.00403
12rs22380362107103AG0.8220.99310.87120.05988213325228150.00039
12rs108486602449876AG0.8810.9950.87290.05903550650720060.00182
12rs123196702475982AG0.9240.99490.87390.05853826065267030.06053
12rs122982782528776TC0.970.99480.87530.05784307153250950.02221
12rs47656762359575AG0.9580.99660.87650.05724807957018630.01437
12rs21086362029854TG0.9880.99650.88620.05246825430440690.00639
12rs47659682658111TC0.9571.0080.88630.05241925069567750.02787
12rs22832702052454AG0.7550.99530.88630.05241925069567750.0132
12rs110622612518202AC0.8341.0130.89540.04798290995257370
12rs110622682524563CG0.970.99580.89810.04667530361081470.02224
12rs10065642538831AG0.9981.0050.90030.04561274985548490.01004
12rs47659622539893CG0.980.99550.90120.04517881694820680.01005
12rs22833262569753AG0.9391.0030.90390.04387961360698040.0172
12rs22390322207399AG0.8820.99610.90760.04210551278710160.00469
12rs7407272629402TC0.9421.0030.91240.0398147233953890.01358
12rs107325942541278TC0.9721.0040.92340.03461012978487770.01005
12rs22833252546063AG0.7590.99230.94140.02622580602941970
12rs110622822567642TC0.4220.99680.94330.02535016556127790.01505
12rs116087402483590AG0.9431.0020.94910.0226880266030740.02821
12rs41267112097572AG0.9871.0010.95350.02067930261797569e-04
12rs22833102439719TC0.9250.99890.96620.0149329668494990.00917
12rs73134032418535AG0.8561.0010.96660.01475320919713830.06924
12rs108486772570473AG0.8490.9990.96780.01421438222739480.06862
12rs22390562338456TC0.6491.0030.96990.01327304066878150.00539
12rs22390412298398AG0.9841.0010.97020.01313872970995520.00063
12rs10763462424539TC0.961.0010.97690.01014989039681960.00505
12rs22390932479823AG0.8960.9990.97740.009927665307846980.00235
12rs79615572363852AG0.96210.98630.005990966876386740.01504
12rs22380952620073AG0.9260.99960.98770.005374946231395340.01956
Table Legend: Table of association results for SNPs across the selected gene (+10Kb upstream and downstream of the
union of the selected gene’s Refseq transcripts).

 

 

References

 

Major Depressive Disorder Working Group of the Psychiatric GWAS Consortium, Ripke S, Wray NR, Lewis CM, Hamilton SP, et al. A mega-analysis of genome-wide association studies for major depressive disorder. Mol Psychiatry. 2013 Apr;18(4):497-511. doi: 10.1038/mp.2012.21. Epub 2012 Apr 3. PubMed PMID: 22472876.