Metamoodics Gene Information

 

  Chromosome: chr6    Cytoband: q25.1-q25.2    Gene: SYNE1

 

MD - Genomewide Association Studies for SYNE1


 

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Description

 
Shown here are the results for gene SYNE1 from a mega-analysis of major depression carried out by the Psychiatric GWAS Consortium (PGC) of 9 GWAS studies. The total sample included 9,240 MDD cases and 9,519 controls all of European ancestry with data on ~1.2M genotyped and/or imputed SNPs.

 

Details of the methods for the mega-analysis are provided here.

 

 

Results Figure

 
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Figure Legend: A regional plot of association findings around the selected gene (+/-10Kb upstream and downstream of the union of the selected gene’s Refseq transcripts). The X-axis shows the position along the gene, the left Y-axis shows the -log10(p-value) and the right Y-axis shows the recombination rate estimated from HapMap data. Each point represents a SNP. The index SNP with the best p-value is depicted by a diamond, and the linkage disequilibrium of neighboring SNPs with the index SNP is color coded.

 

 

Results Table

 
CHR Marker pos_bp (hg18) A1 A2 INFO OR SE -LOG(10)P RSQUARE
6rs9397518152852414TC1.0580.02180.9662.02594909720712(Index SNP)
6rs17082807152934291AG11.1290.0095192.021408673179930.00188
6rs9397512152847582TC0.9921.0570.0096752.014349026309050.987
6rs7738912152922296AG1.010.8890.011571.936666641048250.00188
6rs7763880152843990TC0.9920.94780.01281.892790030352130.93705
6rs2635471152528877AG0.8791.0790.020991.67798756141760.05726
6rs959024152695853AG0.9230.90470.026221.581367312645930.06974
6rs7756410152830890AG10.95360.026711.573326111978630.94813
6rs17304585152502044TC0.8310.91450.028131.55083026783480.0309
6rs579464152824626AG11.0480.02931.533132379645890.94813
6rs4318888152833906TC10.95460.030281.518844129171960.94783
6rs214969152818024CG11.0470.031351.503762454833260.94813
6rs169974152816925TC1.010.95720.041341.383629527708730.93532
6rs9397513152848256TC0.9480.94570.042151.375202421039240.43286
6rs214976152813957AG1.010.95770.043591.360613130982320.93532
6rs9322372152849516AG0.9930.94810.044231.35428306063040.4578
6rs70018152815726AG1.011.0440.04441.352617029885380.93519
6rs527021152809887TC11.0430.049851.302334837352330.92282
6rs502268152810489TG10.95910.05111.291579099865290.92342
6rs214993152807879AG0.9911.0430.052491.279923427231860.92301
6rs9371601152832266TG0.9921.0420.06211.206908399823420.76132
6rs13200897152868320TC0.9490.95120.066031.180258702726990.15012
6rs1203233152756299TG0.9771.0410.069441.158390287831560.58079
6rs20585152756139AC0.9791.040.074661.126912014409710.58079
6rs2141151152891068AC0.9920.95290.074861.12575017722160.14249
6rs2763034152535213CG0.9120.95010.076231.117874080229970.00183
6rs9371604152867915AT0.9561.0580.077121.112832979105230.32408
6rs522437152760911CG0.9780.96210.081111.09092559859910.58079
6rs214944152754445TC0.9771.0390.082171.085286713026380.58079
6rs13192881152684871CG0.970.94030.08281.081969663215120.04746
6rs2758809153005081AG1.010.95950.083851.07649693305790.13556
6rs214952152764408AC0.9820.96360.087641.057297631111330.66086
6rs2623943152992834AG0.990.96040.092831.032311649546690.00292
6rs7745725152893977AG0.9750.9610.093721.028167720075070.43688
6rs725235152695457TC0.9530.94430.09431.025488307262670.00356
6rs9942542152753995TC0.9990.96160.094651.023879381700180.18322
6rs7740022152843902TC0.9861.0530.094891.022779553364610.32127
6rs177330152763921AG0.9760.96380.095771.018770512580.58079
6rs9322361152500836AG0.9770.95420.098281.007534852191960.01254
6rs2057399152991746AG0.9891.040.10070.9969705294463820.00292
6rs2635475152518341AG0.8680.96320.10160.99310629205210.00055
6rs544863152770507AC0.9831.0360.10410.9825492704894640.63753
6rs553642152793251TC0.9781.0360.10660.9722427953094470.67272
6rs214997152804282AG0.9770.96540.10660.9722427953094470.67272
6rs525210152794017TC0.9780.96570.1090.9625735020593760.67272
6rs2623964152929138TC0.8921.0370.11010.9582126810282480.0132
6rs2623945153002900AC0.9891.0390.11330.9457700901366030.00292
6rs12664753152656893AG0.9580.95760.1160.9355420107730820.01581
6rs215001152802599AG0.9931.0350.11630.9344202852715520.59346
6rs1727051152986584AC0.9890.96310.11740.9303319030884040.00292
6rs214987152775286AG0.9781.0350.11790.9284861949049110.66086
6rs127196152769024AC0.9831.0350.11890.9248181453813080.63753
6rs1727042152980710TC0.9891.0370.12170.9147094217699350.00113
6rs214978152773091AC0.9750.96590.12190.9139962943816180.5592
6rs1744385152982159AG0.9850.96390.12240.9122185821904580.00113
6rs9478310152644832TC0.9520.93160.12350.9083330424043150.00078
6rs9371600152832226AG1.011.0430.12490.9034375616258650.35395
6rs1028651152979558TC0.9890.96440.12580.900319358890750.00113
6rs1744380152984514AG0.9871.0370.12670.8972233851165590.00292
6rs2763022152560194TC0.9330.95050.12740.8948305720006680.00427
6rs2623953153007550AG0.9760.96390.12750.8944898152300260.00128
6rs2758805153000994AG0.9910.96420.12840.8914349762671660.00239
6rs2306915152681941TG0.9931.0470.12860.8907590314117970.0032
6rs1028650152979718TG0.991.0370.12860.8907590314117970.00113
6rs9322379152915650TC0.9991.0440.12950.8877302315827290.04603
6rs2758813153007777TC0.9880.96450.1320.879426068794150.00292
6rs2758811153006098AG0.9891.0360.13970.8548035938858180.00292
6rs1830642153005519AG0.9890.96520.13980.8544928285903370.00292
6rs2813498152533403TC0.841.0450.14040.8526328922062140.02356
6rs1472023152682644AG0.9910.9570.14280.8452717925598440.00385
6rs2348262152525416AG0.8471.040.14340.8434508486682190.00023
6rs17082796152915077TC0.8731.0870.15110.8207355356609750.00724
6rs7751588152839046TC0.9851.0460.15210.8178707859470020.3136
6rs9479283152644902TC0.961.0670.15450.8110715162391470.00078
6rs9371583152677499TC0.9770.95650.15640.8057632512761710.05531
6rs9397510152838758AG0.9851.0440.16380.78568610257560.31383
6rs2623981152883711TC0.9341.0330.16410.7848914189469070.29993
6rs6933201152894911AG0.221.8170.1750.7569619513137060.00509
6rs2496124152899580AC0.9791.0350.18080.7428015738606550.31181
6rs2763028152573915AG0.7860.96240.18470.7335331045597590.01506
6rs2623932152890591AG0.9710.97130.1850.7328282715969860.44649
6rs1844356152683133CG0.9760.9720.18530.7321245806811020.00013
6rs2256135152506532AG0.9881.0290.18590.7307206102281010.04835
6rs7747166152649760TC0.9671.0620.19020.7207894873986050.00068
6rs2695257152899000TC0.9851.0340.19030.720561211712980.31181
6rs2623971152872760TC11.0340.19050.7201050199883620.29738
6rs2623980152883597TC0.990.96680.19060.7198771036976920.31181
6rs2623966152895367TC0.9860.96690.19160.7176044952574740.30331
6rs2092602152778785TC0.9740.96440.19250.7155692661554810.28469
6rs2813532152558134AG0.9031.0420.19910.700928739972590.00769
6rs2882022152908844AG0.9791.0340.20120.696372023616110.31828
6rs9397095152682218TC0.9841.0280.20330.6918626213619612e-05
6rs4870079152526456AG0.5721.040.20640.6852903070448260.0028
6rs17082386152615419AG0.8931.0760.20680.6844494655780950.00126
6rs1322509152938448AT0.980.97330.21070.67633546439190.07603
6rs12661143152793953TC0.9470.96010.21290.6718243385616770.19142
6rs2623972152871485AG0.9981.0330.21380.6699922991272410.29738
6rs6935362152794947AG0.9611.0410.21650.6645420993106160.222
6rs9371241152510000CG0.9930.96920.2170.663540266151470.00737
6rs7450824152479796TC0.991.0310.21950.658565475421860.00877
6rs7738189152685804TC0.9621.0270.22350.6507224725320457e-05
6rs12173486152914271AG0.860.96650.22380.6501399178076690.15021
6rs9479291152685858TC0.9490.97380.22530.6472388082761690
6rs2141150152910325TG0.9790.96920.22750.6430185990068690.31181
6rs12055686152836102TC0.9910.97010.2280.6420651529995460.38091
6rs818452152957489TC0.9131.0520.23140.6356366453842690.08241
6rs1744396152962353AG0.9330.97020.23340.6318991482906490.01397
6rs9383976152584241AG0.9131.0320.24190.616364131638120.00049
6rs9383963152477851TC0.9831.030.24320.6140364293993030.00877
6rs12213919152528065TC0.570.95230.24440.6118987984294830.01979
6rs1631293152981579TC0.9880.97360.2460.6090648928966210.00252
6rs7747960152833167AC0.9861.0390.24640.6083592965076120.24644
6rs4645434152706954AC0.9861.0260.24790.6057234732321790.00393
6rs1744391152978454TC0.9870.97370.2480.6055483191737840.00193
6rs2171758152720691TC0.9791.0250.25160.5992893632267690.00284
6rs9479280152616586AT0.9591.0560.25610.591590421531570.00078
6rs2635447152531606AG0.9471.0250.25690.5902358957336542e-05
6rs13211987152497791AG0.9850.96660.26050.5841922723644570.00141
6rs7765586152990802AG0.9930.97420.26240.5810361692963770.00246
6rs1631457152988207TC0.9921.0260.26560.575771929304020.00496
6rs9322375152865246AG0.1362.6890.26930.569763646588490.00509
6rs2295041152814887AT0.9631.0370.27250.5646334933873390.24644
6rs2635473152528341TC0.8420.97360.27930.5539290642989950.00292
6rs2695261152911419AG0.9760.97220.280.5528419686577810.31181
6rs2673776152564505TG0.970.97710.28680.5424208530042370.01095
6rs12526147152806894TC0.9480.96580.28740.5415132362017930.222
6rs718527152511829TC0.9871.0230.28860.5397036732425250.05345
6rs6934016152498721AC0.9840.96840.28930.5386515663520170.00141
6rs1322512152989646AC0.9911.0250.29090.5362562787529410.00396
6rs6557213152690620AG0.921.0240.29270.5335772775662080.03881
6rs17082389152619445TC0.9570.95070.29570.5291486754738820.00078
6rs860173152965158AC0.9560.97410.29610.5285615926107010.0161
6rs2758812153007601TC0.991.0250.29650.5279753022997190.00396
6rs9397105152814187TC0.9830.96590.30010.5227340045751470.2397
6rs2178009152946739AG0.980.97790.30110.5212892444872410.06884
6rs7764211152610763AG0.8920.94210.30350.5178413045887240.00123
6rs13218505152724408AG0.9540.9210.30490.5158425756346190.01104
6rs214972152817506AG11.0260.30520.5154154707171570.32958
6rs13218536152724551TC0.9490.9210.30560.5148466500963480.01104
6rs13220008152742658AG0.8170.9570.30660.5134278494816440.09564
6rs214992152808459AC0.9980.97480.31030.5082182244158340.36546
6rs2813554152484031AG0.9921.0260.31060.507798548607460.01404
6rs2813563152488180TC0.9921.0260.31180.5061238891471770.01404
6rs2747654152488792AG0.990.97430.31270.5048721187570670.01295
6rs17082383152608381TC0.8881.060.31820.4972998246894370.00123
6rs725467152489412TC0.9881.0260.31840.4970269409343690.01404
6rs2813519152549682AT0.8480.91810.31920.4959371173213080.00744
6rs9397492152583927TG0.9230.97650.31950.4955291375055810.00434
6rs4632900152714233TC0.9561.030.32260.4913356369470570.04039
6rs12193119152626755TC0.8921.0490.32410.489320968967790.00081
6rs9383977152584655TC0.9271.0240.32810.4839937696139520.00434
6rs2813558152484514AC0.991.0250.32830.483729117270660.01404
6rs4407724152725106TG0.9861.0230.32920.4825401734597685e-04
6rs2813557152484422AG0.9911.0250.33010.4813544756696880.01404
6rs2747653152487750TC0.990.97530.33050.4808285361783410.01404
6rs17082236152512445AC0.8071.0530.33110.4800408192479324e-05
6rs12681152485082TC0.991.0250.33140.4796474959166820.01404
6rs9371244152585108TG0.8961.0270.33430.4758636234074310.00309
6rs11752725152838769AG0.9691.0250.33550.4743074754949890.24682
6rs9478314152694730TC0.9131.0220.3360.4736607226101560.03255
6rs13210127152713558TG0.9691.0790.34050.4678828837511960.01104
6rs7746517152705622AC0.9630.97930.34630.4605475084505390.00294
6rs2813497152529523AG1.010.97980.3490.457174573040825e-05
6rs17082180152499786AG0.9690.97220.34940.4566770993530882e-04
6rs7772542152556951TC0.8591.0340.35120.4544454927659350.00702
6rs9478320152713168AC0.9780.98050.370.4317982759330050.00614
6rs9478325152720780AG0.9630.97370.37010.4316809149048880.03986
6rs2449116152879814AT0.970.98090.37150.4300411819034060.27232
6rs997769152530731TC0.9931.020.37160.4299242946783962e-05
6rs9397537152983552TC0.9671.060.3780.4225082001627750.00074
6rs9397084152516483TC0.9841.0230.37880.4215900296687640.00668
6rs9478321152713246AG0.9820.98090.37890.4214753947250070.00638
6rs2747660152506060AC0.9540.97880.3790.4213607900319280.02937
6rs2295193152494787AG0.9640.98130.38020.4199878874705760.04307
6rs1387549152713668AG0.9830.98130.38860.4104972037362360.00638
6rs9397102152717547AG0.9850.98130.38980.4091581652183970.00638
6rs2029413152715782TG0.9850.98140.39090.4079343295677530.00868
6rs6908392152714840AG0.9851.0190.39240.4062710012920890.00638
6rs6932325152715212AC0.9850.98160.39540.4029633350223460.00638
6rs2813538152562937AC0.9531.0180.40070.39718065756730.00931
6rs630548152655817AC0.941.0250.40310.3945872018469490.00471
6rs6940651152983708TC0.9841.0250.4040.3936186348893950.02769
6rs719764152564066CG0.9221.0180.4220.3746875490383260.00574
6rs2038615152968960AG0.990.98230.4310.3655227298392680.00039
6rs9479338152911863CG0.2230.56970.43920.3573376685579650.00509
6rs9479299152699909AG0.8871.0180.44070.3558569494900810.06119
6rs6557199152518477TC0.3820.93480.4490.3477536589966770.00202
6rs2635438152548163TC0.8530.93830.45220.3446694419906590.00744
6rs10485256152655866TC0.9521.0210.45270.3441895055047480.02217
6rs2459110152492456AC0.9520.98370.45740.339703839729270.03922
6rs9371587152702530TG0.9620.98050.46030.3369590251060260.0615
6rs17842543152872941AG0.9621.0320.4640.3334820194451190.08008
6rs10485257152662566AG0.9480.980.46520.3323602939435890.02217
6rs9397085152520513TG0.9050.98040.46860.3291977157390567e-04
6rs584336152657866AG0.9551.0180.47760.3209356818786870.09952
6rs17090956152863851TC0.9660.9710.49510.3053070736685160.08008
6rs2763031152534210TG0.9791.0150.49730.3033815407677750.00028
6rs1000864152540299TC0.9290.98240.49780.3029451077274260.00424
6rs2813483152505090AG0.9690.98420.50430.2973110318408670.04402
6rs6901631152608740TC0.9680.97910.5060.2958494831602010.01124
6rs4142055152592176TC0.9810.98550.50640.2955063029907010.01604
6rs554608152793119AC0.9840.98320.51240.2903908789273510.29606
6rs548978152760315TC0.9880.98320.51270.2901366825596010.27226
6rs214989152780038AG0.9720.98280.51810.2855864077128790.20762
6rs215006152797321TC0.9871.0170.52290.2815813581703440.29606
6rs6934344152523674AG0.8390.98270.52780.2775306141159690.00252
6rs3798756152570953AG0.7980.97790.53070.2751509123706140.00979
6rs2813484152505595AG0.9621.0150.53150.2744967311406840.04402
6rs2813503152537504AG0.8551.0270.53320.2731098592581780.00714
6rs998147152530987TC0.9440.98280.53390.2725400791420910.00237
6rs1408458152660113TC0.9580.98440.53390.2725400791420910.01408
6rs1110227153003973TC0.9910.98680.53530.2714027566165680.13172
6rs2747642152515667TC0.9451.0150.53630.2705922030369320.00557
6rs1407490152982746TC0.9581.0130.54850.260823368089270.03624
6rs1554783152918770AG0.9391.0160.54940.2601113449154570.01368
6rs2813490152510077TC0.9740.98610.55330.2570393297858480.04832
6rs2623960152935134TC0.9550.98470.55440.256176778396250.01929
6rs1408459152665225TC0.9571.0140.55640.2546128786799910.01043
6rs2813566152499767AG0.9650.9860.55990.2518895325050160.05457
6rs9478335152873777TG0.2260.66290.56050.2514243830690080.00509
6rs6940741152704213AG0.8640.97270.56220.2501091587285780.0128
6rs2813512152546749TG0.9940.98790.56370.2489519651798120.00048
6rs2763015152549890AC0.980.98790.56640.2468767553182870.00024
6rs7382254152586064AG0.9251.0210.56940.2445825371890640.01154
6rs9322378152914604AG0.850.98710.57070.2435921274510420.02175
6rs732496152995144AC0.9911.0120.57170.2428318077857270.13172
6rs214950152750003AG0.9811.0150.57460.2406343783440710.25805
6rs6937954152519600AT0.8380.98320.58120.2356743943740165e-04
6rs2635443152562187TC0.9490.98810.58170.2353009362016320.00631
6rs674724152665613TC0.9241.0150.5860.2321023839819090.01039
6rs2635462152558808TC0.971.0120.58760.2309182128817810.01877
6rs17082253152521280AC0.8380.98360.58890.2299584456803310.00035
6rs2635457152553471TC0.7970.95490.59330.2267256516625460.00744
6rs1324452152535230TG0.9441.0120.59420.2260673525323550.00083
6rs2635472152528696AG0.9341.0130.59970.2220659511622211e-05
6rs2813510152545662TG0.8791.0140.60010.2217763732339040.00731
6rs9397493152584561TG0.9240.98840.6010.221125527997266e-05
6rs214959152744514AG0.9630.9890.60750.216453717729650.00325
6rs2813533152558271TC0.9710.98850.60930.2151688218755310.01877
6rs910415152514874TC0.8090.96970.61090.214029874867990.00435
6rs2253512152564619AG0.9131.0150.61350.2121854329369770.03025
6rs12201313152920883TC0.9761.0110.61650.210066919068250.00828
6rs12110523152597951TC0.9341.0140.61930.2080989199904290.02289
6rs10484863152505181TC0.9970.98220.63080.2001083153431350.00994
6rs2813504152537536AG0.9470.98960.64260.1920592787845010.00064
6rs2673783152529278CG0.9370.98790.65090.1864857284581170.00019
6rs2635469152535158TC0.9461.010.65350.1847544080834370.00083
6rs2635467152535541AG0.8990.97890.65370.1846215150340820.00126
6rs633891152634444TC0.9540.99020.65520.1836261112476380.02138
6rs7759171152704969AG0.9011.010.65660.1826991216066790.00444
6rs2813501152537099AG0.9030.97920.65770.1819721581407440.00126
6rs9371589152703820TG0.9090.99020.65980.1805876887906750.00148
6rs12110479152596089TC0.9310.9880.6650.1771783546968950.02281
6rs4870095152702003AG0.8151.010.67140.1730186630880060.04184
6rs6901280152527972TC0.6550.98390.68190.1662793095553670
6rs6900213152563648AG0.8640.98730.6850.1643094285075740.0039
6rs2635468152535412AG0.8960.98140.6930.1592667653881930.00126
6rs17194424152563124AG0.5761.0240.69350.1589535345906960.00112
6rs2296254152596805TC0.9641.010.69780.1562690348879080.00091
6rs6909384152969442AG0.9360.98490.70340.1527976360190760.01243
6rs2747655152489014TC0.9650.99040.70350.1527358982292360.00861
6rs2747665152510136TC0.9911.0090.70620.1510722867729220.02
6rs1744397152962545CG0.9341.0080.70860.1495988520028420.00479
6rs2695253152968210TC0.951.0080.70950.1490476002065070.00613
6rs9478334152867990AG0.380.64850.71460.1459369881335790.00509
6rs9371606152919487CG0.9621.0080.71710.1444202774982820.09535
6rs2253407152565243TG0.9341.0080.71750.144178094593970.00888
6rs2813550152483280AC0.971.0090.71870.1434523551432520.00551
6rs6939382152632310TG0.9870.99220.72240.1412222626945510.00878
6rs4472361152683299TG0.9710.99180.72580.1391830361354622e-05
6rs7768921152584934AG0.8841.0080.73430.1341264717921850.0016
6rs7741183152683349TC0.6621.0280.73710.1324735888002570.00306
6rs9479258152559196AG0.9091.0140.73790.1320024896550490.00036
6rs7776230152685563TC0.9921.0080.74060.1304162922865760.0019
6rs6557210152612108AG0.9991.0070.74140.1299474183064550.00943
6rs6557218152750490CG0.9721.0180.7590.119758224104520.0364
6rs9371582152674516TC0.8290.99080.76140.1183871275216520.00322
6rs2635459152552405AG0.9830.99330.76180.1181590316750730.00141
6rs2758791152928019TC0.9470.99250.76450.1166225102516610.0189
6rs2635458152553011AT0.9931.0070.76540.116111542111520.00116
6rs4870091152627192CG0.9941.0060.76760.1148650339365660.00894
6rs17082167152494621TC0.7821.0210.76940.1138478180292030.00016
6rs818440152935263AC0.9510.99270.77090.1130019543289010.0189
6rs2763016152553368TC0.9930.99360.77110.1128892968751160.0016
6rs9383615152621508TC0.9921.0060.77170.1125514997500460.0049
6rs2813526152553113TC0.991.0060.77280.1119328865925630.00061
6rs7740449152616193TC10.99380.77380.1113712746147740.00716
6rs2141152152889028AG0.9820.99350.77390.1113151533403010.00094
6rs3888239152607590TC0.9921.0060.77420.1111468330170640.0076
6rs9371592152730888AG0.9841.0060.77460.1109225073499360.03282
6rs9322366152644419AG0.941.010.77660.1098026137899710.00365
6rs6557214152724484AG0.9551.0080.77770.1091879010448760.0625
6rs4870090152627147AG0.9950.99390.77780.1091320611885590.00894
6rs2813485152508115TC0.990.99370.77910.1084067956510350.02
6rs866015152929977TG0.9520.9930.77920.1083510561294410.0267
6rs6937888152629627AC0.9851.0060.77960.1081281695544160.00886
6rs9383983152630181TC0.9841.0060.78390.1057393355530120.02884
6rs7776399152685658TC0.9851.0060.78670.1041908498308690.00624
6rs4870084152585642TC0.9381.0070.7920.1012748184105060.00378
6rs2673790152509136AG0.9741.0060.79410.1001248039789890.02023
6rs2813524152552650AG0.9930.99430.79610.09903237608087570.0016
6rs1933689152746600AG0.9271.0180.79610.09903237608087570.01023
6rs2747662152508367TC0.9821.0060.80070.09653017149282990.02023
6rs9371605152878353AG0.9310.99420.80380.09485199814398390.00204
6rs4869761152620995AC0.9851.0050.80420.09463593123310770.00359
6rs1609125152882270TC0.9750.99430.80420.09463593123310770.00119
6rs9397486152491593AG0.9611.0060.81120.09087205801073920.01788
6rs4506057152755984AC0.6340.98340.81230.09028354676565540.02618
6rs4870089152616866AG1.010.9950.81490.0888956821959640.0074
6rs17803505152589720TG0.9821.0090.81820.0871405248376450.00321
6rs9371245152603041AC0.9991.0050.82120.08555105930144570.01037
6rs9479232152531944AG0.9030.99530.84050.07546228222451020.00753
6rs5002573152915313AC0.9150.99410.84380.07376047895413781e-04
6rs9383626152917555TG0.9910.99370.84630.07247565912497130.12251
6rs6911096152693727AT0.9050.99510.85190.06961138175567820.10384
6rs4870100152729630AT0.9711.0040.85350.06879647454924760.01135
6rs818442152934431AC0.9810.99610.85440.06833876031551880.09107
6rs1890100152679902AG0.9861.0040.85440.06833876031551880.00066
6rs2813487152508275AG0.9951.0040.85460.06823711151882230.02
6rs17779152152944479AG0.9620.99480.85640.06732334137759930.00019
6rs17195304152582050TC0.9511.0070.86040.0652995982845750.0027
6rs3822992152729703AG0.9681.0070.86180.0645935102476510.03437
6rs6940845152609138AG0.9730.9960.86240.06429125215733650.02402
6rs17700972152944502TC0.9591.0050.86380.06358680028852030
6rs2250122152485161TG0.9081.0050.86520.06288348923294610.04071
6rs9397083152484494AG0.9181.0040.8660.06248210798265340.04071
6rs11155858152890407AG0.9761.0040.86690.06203099704854720.0238
6rs6925149152494452TC0.8491.0080.86930.06083032037482260.01294
6rs2141149152912676AG0.9611.0040.86990.06053066915646990.00114
6rs6914571152699084AT0.941.0040.8710.05998184499233680.10657
6rs9479255152557483AG0.8971.0070.87340.05878681241467870.00036
6rs17082632152763658AC0.8391.0090.87370.05863766428823890.02949
6rs1999829152697908TC0.9380.99620.87920.05591232058456580.10657
6rs6940851152612733AG1.010.99710.8910.05012229596312520.0074
6rs2141153152935302AG0.9640.99610.89230.04948910701400340.00019
6rs9397523152913965AC0.9360.9970.89610.04764352267620930.00073
6rs214977152812128TC0.7380.99440.90240.04460091336073290.03831
6rs12528046152938667AG0.9590.99650.90360.04402377775167460.00019
6rs11755392152566535TC0.630.99360.90390.04387961360698040.00342
6rs2747652152478709TC0.950.99740.90470.04349540968330250.00058
6rs9397496152633125AG0.9311.0040.9050.04335142079479670.00315
6rs12178201152685924CG0.9311.0060.91150.04024332700900490.01531
6rs2788381152653569AC0.9590.99710.9130.03952922246570110.00658
6rs4869757152602171AC0.9650.99750.9150.03857890593355170.02695
6rs9371588152702941CG0.9151.0030.91530.03843653763793050.08121
6rs1853280152937087AG0.9610.99710.91990.03625938114211590.00019
6rs2459111152492163TC0.9551.0020.92580.03348282355320810.03796
6rs2306914152681803AG0.9350.99410.9260.03338901331806570.00066
6rs2673781152491422TC0.9531.0020.9270.03292026585550290.03796
6rs2013767152679371TC0.9531.0040.93830.02765828367425190.01531
6rs6928675152601298AG0.9641.0020.94190.02599520310258540.02695
6rs9371581152671279AG0.9171.0020.94240.02576472255697360.01374
6rs9478316152700667TC0.8940.99850.94830.02305424944075780.06881
6rs9383985152671310TC0.9311.0010.95740.01890657685407020.01499
6rs17082645152768796TC0.9570.99610.95990.01777400832532520.01023
6rs2813495152518645CG0.5511.0020.96140.01709588220737190.00264
6rs11155860152936879AC0.9611.0010.96160.01700554534133570.00019
6rs4870102152737194AG1.010.9990.9630.01637371287546550.02706
6rs2295192152485454TC0.6170.99670.96370.01605814101611180.00149
6rs6913579152735877TC10.99910.96440.01574279829458390.02847
6rs4112833152671508TC0.8431.0010.96720.01448371214728450.00183
6rs4870113152935595AG0.9620.9990.97310.01184252744324710.00019
6rs9383964152486508TC0.9660.99870.97340.01170865809251240.01087
6rs10499268152694292AG0.9121.0020.97440.01126272471119990.01535
6rs17701297152952632AG0.9610.99910.9760.01055018233330820.00019
6rs12662994152672639TC0.641.0010.98040.008596697419959680.00221
6rs9322364152603430AG0.9941.0010.98240.007711646202907540.0075
6rs17082323152568080TC0.8651.0010.98410.006960768193090470.00065
6rs9479288152667705TG0.9190.99920.98470.006696062080525480.00013
6rs214955152739399TC1.0110.98730.005550862985963990.02773
6rs9397501152674443AG0.920.99960.98770.005374946231395340.00995
6rs4870101152737001AT10.99970.98860.004979393875242020.02706
6rs9371247152620475AG0.940.99960.98910.004759798137184560.01551
6rs1873176152732252AG110.98910.004759798137184560.02644
6rs9371250152723710TC0.90610.99260.003225729138695430.00741
6rs17082381152606687CG0.9760.99970.99430.002482560585275160.02493
Table Legend: Table of association results for SNPs across the selected gene (+10Kb upstream and downstream of the
union of the selected gene’s Refseq transcripts).

 

 

References

 

Major Depressive Disorder Working Group of the Psychiatric GWAS Consortium, Ripke S, Wray NR, Lewis CM, Hamilton SP, et al. A mega-analysis of genome-wide association studies for major depressive disorder. Mol Psychiatry. 2013 Apr;18(4):497-511. doi: 10.1038/mp.2012.21. Epub 2012 Apr 3. PubMed PMID: 22472876.